STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000009195Regulation of nuclear pre-mRNA domain containing 1A. (312 aa)    
Predicted Functional Partners:
polr2b
RNA polymerase II subunit B.
   
 0.980
ENSCHAP00000025267
5'-3' exoribonuclease 2.
   
 
 0.967
DXO
Decapping exoribonuclease.
    
 
 0.966
ENSCHAP00000041613
Polymerase (RNA) II (DNA directed) polypeptide A.
    
 0.963
ENSCHAP00000048110
annotation not available
    
 0.962
rpap2
RNA polymerase II associated protein 2.
   
 0.917
ENSCHAP00000016476
annotation not available
   
 0.908
pcf11
PCF11 cleavage and polyadenylation factor subunit.
    
 0.899
ENSCHAP00000003559
Centrosomal protein 83.
    
 0.897
sclt1
Sodium channel and clathrin linker 1.
    
 0.896
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.