STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TWNK-2Twinkle mtDNA helicase. (719 aa)    
Predicted Functional Partners:
ENSCHAP00000045505
Polymerase (DNA directed), gamma.
   
 
 0.794
ENSCHAP00000048590
annotation not available
   
 
 0.689
ENSCHAP00000058425
Polymerase (DNA directed), theta.
   
 
 0.689
ENSCHAP00000060536
Helicase, POLQ like.
   
 
 0.689
ENSCHAP00000019769
Single-stranded DNA binding protein 1.
   
  
 0.536
ENSCHAP00000047282
Polymerase (RNA) mitochondrial (DNA directed).
   
  
 0.517
tfam
Transcription factor A, mitochondrial.
      
 0.506
ENSCHAP00000011838
GA binding protein transcription factor subunit alpha.
     
 0.498
ENSCHAP00000035759
Polymerase (DNA directed), gamma 2, accessory subunit.
      
 0.487
ENSCHAP00000000600
Coproporphyrinogen oxidase.
    
   0.478
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.