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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105889118Small nuclear ribonucleoprotein Sm D3-like. (131 aa)    
Predicted Functional Partners:
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.999
snrpg
Small nuclear ribonucleoprotein polypeptide G.
   
 0.999
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.999
snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.999
lsm6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.997
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.997
lsm4
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
0.997
lsm8
LSM8 homolog, U6 small nuclear RNA associated.
   
 0.996
ENSCHAP00000058027
Small nuclear ribonucleoprotein polypeptide C.
   
 0.996
ENSCHAP00000051248
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.995
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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