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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
suds3SDS3 homolog, SIN3A corepressor complex component. (318 aa)    
Predicted Functional Partners:
ENSCHAP00000020151
Inhibitor of growth family, member 1.
    
 0.997
ENSCHAP00000021246
Translocase of outer mitochondrial membrane 20.
    
 0.997
ENSCHAP00000030862
AT rich interactive domain 4A (RBP1-like).
    
 0.997
ENSCHAP00000010428
SIN3 transcription regulator family member B.
   
 0.994
ENSCHAP00000061580
SIN3 transcription regulator family member Ab.
   
 0.994
ENSCHAP00000011383
annotation not available
    
 0.983
LOC105893332
Histone-binding protein RBBP7.
    
 0.983
ENSCHAP00000047461
SIN3-HDAC complex associated factor.
    
 0.979
ENSCHAP00000051493
Mortality factor 4 like 1.
   
 0.978
hdac3
Histone deacetylase 3.
    
 0.975
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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