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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000009309CTR9 homolog, Paf1/RNA polymerase II complex component. (1139 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.999
rtf1
RTF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.995
ENSCHAP00000034363
PAF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.994
supt16h
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 0.993
supt5h
SPT5 homolog, DSIF elongation factor subunit.
    
 0.993
ENSCHAP00000046642
SPT6 homolog, histone chaperone and transcription elongation factor.
  
 0.993
ENSCHAP00000059699
WD repeat domain 61.
    
 0.993
supt4h1
SPT4 homolog, DSIF elongation factor subunit.
   
 0.972
ENSCHAP00000040617
SPT4 homolog, DSIF elongation factor subunit.
   
 0.972
ENSCHAP00000035435
Polymerase (RNA) II (DNA directed) polypeptide C.
  
 0.971
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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