STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctage5CTAGE family member 5, ER export factor. (2216 aa)    
Predicted Functional Partners:
ENSCHAP00000017151
Prolactin regulatory element binding.
    
 0.881
mysm1
Myb like, SWIRM and MPN domains 1.
   
 0.740
ENSCHAP00000021246
Translocase of outer mitochondrial membrane 20.
    
 0.716
ENSCHAP00000030862
AT rich interactive domain 4A (RBP1-like).
    
 0.716
LOC105888715
Extracellular serine/threonine protein kinase FAM20C-like.
    
  0.702
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.687
sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.686
ENSCHAP00000013833
SEC23 homolog B, coat complex II component.
    
 0.682
ENSCHAP00000027101
Sec23 homolog A, coat complex II component.
    
 0.682
ENSCHAP00000014945
SEC24 homolog D, COPII coat complex component.
    
 0.677
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.