STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000009363annotation not available (401 aa)    
Predicted Functional Partners:
LOC105901516
Calpain small subunit 1-like.
 
 
 0.863
LOC105909712
Calpain small subunit 1-like.
 
 
 0.827
ENSCHAP00000061257
Calpastatin.
    
 0.806
ENSCHAP00000016490
Intersectin 2b.
   
 
  0.656
ENSCHAP00000057857
Intersectin 2a.
   
 
  0.656
ENSCHAP00000003852
penta-EF-hand domain containing 1.
   
 0.597
pdcd6
Programmed cell death 6.
   
 0.597
ENSCHAP00000014874
annotation not available
   
 0.595
sri
Sorcin.
   
 0.595
ENSCHAP00000048910
Leucine-rich repeats and guanylate kinase domain containing.
    
 
 0.585
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.