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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000009375Bone morphogenetic protein/retinoic acid inducible neural-specific 1. (765 aa)    
Predicted Functional Partners:
ENSCHAP00000038384
annotation not available
    
 
 0.823
smpdl3a
Sphingomyelin phosphodiesterase acid like 3A.
      
 0.542
ENSCHAP00000025545
annotation not available
      
 0.535
ENSCHAP00000043107
WD repeat domain 35.
      
 0.520
ENSCHAP00000034725
Proteasome activator subunit 4b.
      
 0.497
ENSCHAP00000032105
Neutral sphingomyelinase (N-SMase) activation associated factor.
      
 0.444
cnep1r1
CTD nuclear envelope phosphatase 1 regulatory subunit 1.
      
 0.435
ENSCHAP00000057082
Astrotactin 1.
   
  
 0.420
LOC105894317
Vesicle-trafficking protein SEC22b-B.
      
 0.412
lrig3
Leucine rich repeats and immunoglobulin like domains 3.
      
 0.407
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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