Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000009398AT hook containing transcription factor 1. (2402 aa)    
Predicted Functional Partners:
nup160
Nucleoporin 160.
   
 0.998
nup133
Nucleoporin 133.
   
 0.998
nup37
Nucleoporin 37.
    
 0.995
ENSCHAP00000014546
Nucleoporin 107.
    
 0.992
nup43
Nucleoporin 43.
    
 0.992
nup98
Nucleoporin 98.
   
 0.990
nup85
Nucleoporin 85.
    
 0.988
seh1l
SEH1 like nucleoporin.
   
 0.988
sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.986
nup35
Nucleoporin 35.
    
 0.982
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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