PDZD7 protein (Clupea harengus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PDZD7

PDZ domain containing 7. (852 aa)

Predicted Functional Partners:

ENSCHAP00000019356

0.922

ENSCHAP00000035733

0.885

ENSCHAP00000054590

0.845

ENSCHAP00000054593

0.841

ENSCHAP00000016570

0.810

ENSCHAP00000035554

0.810

ENSCHAP00000054562

0.800

ENSCHAP00000004032

0.751

ENSCHAP00000033353

0.735

ift80

0.729

Your Current Organism:

Clupea harengus

NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCHAP00000004032	ENSCHAP00000016570	ENSCHAP00000004032	ENSCHAP00000016570	annotation not available	Whirlin a.	0.751
ENSCHAP00000004032	ENSCHAP00000033353	ENSCHAP00000004032	ENSCHAP00000033353	annotation not available	TNF receptor-associated factor 3 interacting protein 1.	0.998
ENSCHAP00000004032	ENSCHAP00000035554	ENSCHAP00000004032	ENSCHAP00000035554	annotation not available	annotation not available	0.751
ENSCHAP00000004032	ENSCHAP00000035733	ENSCHAP00000004032	ENSCHAP00000035733	annotation not available	Usher syndrome 1C.	0.751
ENSCHAP00000004032	PDZD7	ENSCHAP00000004032	ENSCHAP00000009404	annotation not available	PDZ domain containing 7.	0.751
ENSCHAP00000004032	ift80	ENSCHAP00000004032	ENSCHAP00000024157	annotation not available	Intraflagellar transport 80.	0.998
ENSCHAP00000016570	ENSCHAP00000004032	ENSCHAP00000016570	ENSCHAP00000004032	Whirlin a.	annotation not available	0.751
ENSCHAP00000016570	ENSCHAP00000019356	ENSCHAP00000016570	ENSCHAP00000019356	Whirlin a.	Usher syndrome 2A (autosomal recessive, mild).	0.925
ENSCHAP00000016570	ENSCHAP00000033353	ENSCHAP00000016570	ENSCHAP00000033353	Whirlin a.	TNF receptor-associated factor 3 interacting protein 1.	0.735
ENSCHAP00000016570	ENSCHAP00000035733	ENSCHAP00000016570	ENSCHAP00000035733	Whirlin a.	Usher syndrome 1C.	0.904
ENSCHAP00000016570	ENSCHAP00000054562	ENSCHAP00000016570	ENSCHAP00000054562	Whirlin a.	annotation not available	0.764
ENSCHAP00000016570	ENSCHAP00000054590	ENSCHAP00000016570	ENSCHAP00000054590	Whirlin a.	Vezatin, adherens junctions transmembrane protein.	0.819
ENSCHAP00000016570	ENSCHAP00000054593	ENSCHAP00000016570	ENSCHAP00000054593	Whirlin a.	Adhesion G protein-coupled receptor V1.	0.811
ENSCHAP00000016570	PDZD7	ENSCHAP00000016570	ENSCHAP00000009404	Whirlin a.	PDZ domain containing 7.	0.810
ENSCHAP00000016570	ift80	ENSCHAP00000016570	ENSCHAP00000024157	Whirlin a.	Intraflagellar transport 80.	0.729
ENSCHAP00000019356	ENSCHAP00000016570	ENSCHAP00000019356	ENSCHAP00000016570	Usher syndrome 2A (autosomal recessive, mild).	Whirlin a.	0.925
ENSCHAP00000019356	ENSCHAP00000035554	ENSCHAP00000019356	ENSCHAP00000035554	Usher syndrome 2A (autosomal recessive, mild).	annotation not available	0.925
ENSCHAP00000019356	ENSCHAP00000035733	ENSCHAP00000019356	ENSCHAP00000035733	Usher syndrome 2A (autosomal recessive, mild).	Usher syndrome 1C.	0.862
ENSCHAP00000019356	ENSCHAP00000054562	ENSCHAP00000019356	ENSCHAP00000054562	Usher syndrome 2A (autosomal recessive, mild).	annotation not available	0.880
ENSCHAP00000019356	ENSCHAP00000054590	ENSCHAP00000019356	ENSCHAP00000054590	Usher syndrome 2A (autosomal recessive, mild).	Vezatin, adherens junctions transmembrane protein.	0.921