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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000009427CCR4-NOT transcription complex, subunit 6b. (569 aa)    
Predicted Functional Partners:
cnot1
CCR4-NOT transcription complex subunit 1.
   
 0.976
ENSCHAP00000023575
CCR4-NOT transcription complex subunit 9.
    
 0.963
LOC105912767
CCR4-NOT transcription complex subunit 7.
    
 0.948
cnot8
CCR4-NOT transcription complex subunit 8.
    
 0.945
ENSCHAP00000034363
PAF1 homolog, Paf1/RNA polymerase II complex component.
    
  0.924
ENSCHAP00000012583
PAT1 homolog 2.
    
 0.923
ENSCHAP00000014171
CCR4-NOT transcription complex, subunit 11.
    
 0.923
patl1
PAT1 homolog 1, processing body mRNA decay factor.
    
 0.923
ENSCHAP00000040071
CCR4-NOT transcription complex, subunit 10.
    
 0.913
cnot3
CCR4-NOT transcription complex subunit 3.
    
 0.903
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.