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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105894576Sodium-dependent phosphate transporter 1-A-like. (658 aa)    
Predicted Functional Partners:
ENSCHAP00000052768
Solute carrier family 13 member 1.
  
 
 0.571
slc12a3
Solute carrier family 12 member 3.
     
 0.540
ENSCHAP00000029605
lysyl-tRNA synthetase 1.
  
    0.535
ENSCHAP00000058189
Transient receptor potential cation channel, subfamily M, member 7.
      
 0.527
LOC105889153
Wilms tumor protein homolog.
      
 0.521
ENSCHAP00000025313
Cadherin 17, LI cadherin (liver-intestine).
      
 0.518
ENSCHAP00000026988
glutamyl-prolyl-tRNA synthetase 1.
  
  
 0.486
gale
UDP-galactose-4-epimerase.
     
 0.452
ENSCHAP00000019198
Solute carrier family 13 member 4.
  
 
 0.449
mtfmt
Mitochondrial methionyl-tRNA formyltransferase.
  
  
 0.447
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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