STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000009483Protein phosphatase, EF-hand calcium binding domain 1. (719 aa)    
Predicted Functional Partners:
igbp1
Immunoglobulin binding protein 1.
    
 0.854
ENSCHAP00000002445
SMEK homolog 1, suppressor of mek1 (Dictyostelium).
   
 0.837
ptpa
Protein phosphatase 2 phosphatase activator.
    
 0.830
ENSCHAP00000048221
WD repeat domain 82.
    
 0.823
ENSCHAP00000042014
Anaphase promoting complex subunit 1.
    
 0.811
ENSCHAP00000053382
Protein phosphatase 4, regulatory subunit 2a.
    
 0.800
ppp4r2
Protein phosphatase 4 regulatory subunit 2.
    
 0.800
ENSCHAP00000028521
Cleavage and polyadenylation specific factor 1.
    
 0.792
ENSCHAP00000022226
Symplekin.
    
 0.786
eif2s1
Eukaryotic translation initiation factor 2 subunit alpha.
   
 0.775
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.