Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC105911247Keratin, type I cytoskeletal 13-like. (456 aa)    
Predicted Functional Partners:
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.702
ENSCHAP00000009160
RAN binding protein 2.
    
 0.656
ENSCHAP00000028521
Cleavage and polyadenylation specific factor 1.
    
  0.639
ENSCHAP00000048221
WD repeat domain 82.
    
 0.616
eef1g
Eukaryotic translation elongation factor 1 gamma.
    
 0.604
LOC105903575
pre-mRNA 3'-end-processing factor FIP1-like.
    
  0.548
WDR33
WD repeat domain 33.
    
  0.546
ENSCHAP00000007226
Cleavage and polyadenylation specific factor 2.
    
  0.541
cpsf3
Cleavage and polyadenylation specific factor 3.
    
  0.541
ENSCHAP00000022226
Symplekin.
    
  0.537
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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