Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NELL1Neural EGFL like 1. (824 aa)    
Predicted Functional Partners:
cunh4orf48
Chromosome unknown C4orf48 homolog.
   
 
 0.765
ENSCHAP00000030628
Debranching RNA lariats 1.
    
 
 0.671
ndufaf6
NADH:ubiquinone oxidoreductase complex assembly factor 6.
      
 0.639
s100z
S100 calcium binding protein Z.
   
 0.549
ENSCHAP00000052769
Vacuolar protein sorting 13 homolog A.
   
   0.546
ENSCHAP00000056721
Vacuolar protein sorting 13 homolog C.
   
   0.546
ENSCHAP00000056731
U2AF homology motif (UHM) kinase 1.
    
 
 0.529
ENSCHAP00000021246
Translocase of outer mitochondrial membrane 20.
    
 0.526
ENSCHAP00000030862
AT rich interactive domain 4A (RBP1-like).
    
 0.526
ENSCHAP00000054248
FYVE, RhoGEF and PH domain containing 5a.
    
 
 0.516
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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