Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ENSCHAP00000009655annotation not available (83 aa)    
Predicted Functional Partners:
supt5h
SPT5 homolog, DSIF elongation factor subunit.
    
 
 0.938
ENSCHAP00000025040
UV-stimulated scaffold protein A.
    
 
 0.914
ENSCHAP00000006037
Polymerase (RNA) II (DNA directed) polypeptide J.
   
   0.905
polr2i
RNA polymerase II subunit I.
   
   0.892
IWS1
Interacts with SUPT6H, CTD assembly factor 1.
    
 
 0.890
polr2k
RNA polymerase II subunit K.
   
   0.888
polr2l
RNA polymerase II subunit L.
    
   0.882
ENSCHAP00000052072
Polymerase (RNA) II (DNA directed) polypeptide G-like.
    
   0.882
polr2h
RNA polymerase II subunit H.
    
   0.877
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.864
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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