Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000009775Tripartite motif containing 9. (732 aa)    
Predicted Functional Partners:
ENSCHAP00000047763
DCC netrin 1 receptor.
   
 
 0.842
neo1
Neogenin 1.
   
 
 0.842
ENSCHAP00000041250
Immunoglobulin superfamily, DCC subclass, member 4.
   
 
 0.838
FBXW11
F-box and WD repeat domain containing 11.
    
 0.818
LOC105893085
F-box/WD repeat-containing protein 11-like.
    
 0.818
ENSCHAP00000024034
Exocyst complex component 1.
    
   0.739
DLST
Dihydrolipoamide S-succinyltransferase.
    
   0.727
ENSCHAP00000008243
annotation not available
   
 
 0.712
snap25
Synaptosome associated protein 25.
   
 
 0.712
fbxw2
F-box and WD repeat domain containing 2.
    
  0.695
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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