STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tent4aTerminal nucleotidyltransferase 4A. (822 aa)    
Predicted Functional Partners:
mtrex
Mtr4 exosome RNA helicase.
   
 0.983
ENSCHAP00000014412
annotation not available
   
 0.973
ENSCHAP00000015662
annotation not available
   
 0.961
ENSCHAP00000028382
Terminal nucleotidyltransferase 4B.
  
  
 
0.925
ENSCHAP00000026783
SKI2 homolog, superkiller viralicidic activity 2-like.
   
 0.899
znfx1
Zinc finger NFX1-type containing 1.
    
 0.898
ENSCHAP00000059834
Zinc finger, CCHC domain containing 8.
     
 0.889
ENSCHAP00000016476
annotation not available
    
 
 0.872
ENSCHAP00000033748
Zinc finger, CCHC domain containing 14.
   
 0.872
exosc10
Exosome component 10.
   
 
 0.862
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.