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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plekha1Pleckstrin homology domain containing A1. (409 aa)    
Predicted Functional Partners:
ENSCHAP00000004239
RAD50 interactor 1.
    
 0.879
stx18
Syntaxin 18.
    
 0.855
ENSCHAP00000009396
Unconventional SNARE in the ER 1 homolog (S. cerevisiae).
    
 0.849
ENSCHAP00000017422
NBAS subunit of NRZ tethering complex.
    
 0.706
ENSCHAP00000018322
annotation not available
    
 0.706
ENSCHAP00000018339
annotation not available
    
 0.706
sec22c
SEC22 homolog C, vesicle trafficking protein.
   
 0.688
LOC105891393
Vesicle-trafficking protein SEC22b-A.
   
 0.688
sec22a
SEC22 homolog A, vesicle trafficking protein.
   
 0.688
LOC105894317
Vesicle-trafficking protein SEC22b-B.
   
 0.688
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.