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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000009871Thioredoxin-related transmembrane protein 1. (324 aa)    
Predicted Functional Partners:
suox
Sulfite oxidase.
   
 0.917
ENSCHAP00000033279
Cytochrome b5 reductase 4.
  
 0.813
prdx5
Peroxiredoxin 5.
   
 0.746
ENSCHAP00000007037
annotation not available
   
 0.720
ENSCHAP00000007635
Methionine sulfoxide reductase A.
   
 0.720
ENSCHAP00000062676
Si:ch1073-358c10.1.
   
 0.720
ENSCHAP00000027755
Calmegin.
   
 0.677
ENSCHAP00000037430
Microsomal triglyceride transfer protein.
    
  0.670
ENSCHAP00000010216
annotation not available
  
 0.667
prdx3
Peroxiredoxin 3.
  
 0.667
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.