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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000009901ATP-binding cassette, sub-family B (MDR/TAP), member 4. (1277 aa)    
Predicted Functional Partners:
ENSCHAP00000053322
Transporter associated with antigen processing, subunit type a.
   
 
0.852
ENSCHAP00000041239
annotation not available
  
  
 
0.827
ENSCHAP00000041699
ATP-binding cassette, sub-family B (MDR/TAP), member 5.
  
  
 
0.827
LOC105897182
acetyl-CoA carboxylase-like.
   
 0.747
ENSCHAP00000059139
acetyl-CoA carboxylase alpha.
   
 0.747
ENSCHAP00000062707
acetyl-CoA carboxylase beta.
   
 0.747
ENSCHAP00000040121
ATP-binding cassette, sub-family H, member 1.
  
0.736
ENSCHAP00000011314
Katanin p60 subunit A-like 2.
  
 0.725
ENSCHAP00000000224
Ubiquinol-cytochrome c reductase core protein 2a.
   
 0.704
ENSCHAP00000054866
TAP binding protein (tapasin), tandem duplicate 2.
   
  0.699
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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