STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000009931Pyruvate carboxylase a. (1181 aa)    
Predicted Functional Partners:
mdh2
Malate dehydrogenase 2.
  
 0.939
LOC105906266
Malate synthase, glyoxysomal-like.
   
 0.921
ENSCHAP00000054064
annotation not available
  
 0.918
LOC105909048
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial.
  
 
 0.913
ENSCHAP00000010135
Pyruvate dehydrogenase E1 alpha 1 subunit a.
  
 
 0.912
suclg1
succinate-CoA ligase alpha subunit.
     
 0.912
pdhb
Pyruvate dehydrogenase E1 beta subunit.
  
 
 0.911
ENSCHAP00000010371
L-2-hydroxyglutarate dehydrogenase.
   
 
 0.909
me1
Malic enzyme 1.
   
 0.907
me2
Malic enzyme 2.
   
 0.907
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.