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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbm7RNA binding motif protein 7. (289 aa)    
Predicted Functional Partners:
mtrex
Mtr4 exosome RNA helicase.
    
 0.981
ENSCHAP00000059834
Zinc finger, CCHC domain containing 8.
    
 
 0.979
ENSCHAP00000059480
Exosome component 8.
    
 
 0.928
exosc3
Exosome component 3.
    
 
 0.911
ENSCHAP00000035894
Splicing factor 3b, subunit 2.
    
 0.899
exosc7
Exosome component 7.
    
 
 0.866
ENSCHAP00000052523
Serrate RNA effector molecule homolog (Arabidopsis).
    
 0.797
exosc2
Exosome component 2.
    
 
 0.790
ENSCHAP00000039465
C1D nuclear receptor corepressor.
   
 
 0.783
exosc5
Exosome component 5.
    
 
 0.781
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.