STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbfbCore-binding factor subunit beta. (230 aa)    
Predicted Functional Partners:
cul5
Cullin 5.
    
 
 0.974
runx2
RUNX family transcription factor 2.
    
 0.974
ENSCHAP00000021090
RUNX family transcription factor 2b.
    
 0.974
LOC105896069
Runt-related transcription factor 3-like.
    
 0.974
aicda
Activation induced cytidine deaminase.
    
 
 0.967
ENSCHAP00000048980
annotation not available
    
 
 0.948
LOC105900538
Transcription elongation factor B polypeptide 1-like.
    
 
 0.948
ENSCHAP00000000038
Elongin B.
    
 
 0.928
elob
Elongin B.
    
 
 0.928
lmo2
LIM domain only 2.
    
 0.806
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.