Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000009977annotation not available (243 aa)    
Predicted Functional Partners:
ENSCHAP00000000886
Tight junction protein 1b.
    
 0.798
ENSCHAP00000036405
Tight junction protein 1a.
    
 0.798
LOC105898092
Claudin-10-like.
   
 
0.772
ENSCHAP00000024297
Tight junction protein 3.
    
 0.771
LOC105909311
Claudin-19-like.
  
 
0.759
ENSCHAP00000031067
annotation not available
  
  
  0.738
LOC105898608
Claudin-18-like.
     
0.718
ENSCHAP00000008419
Claudin 2.
  
 
 
0.716
ENSCHAP00000031023
annotation not available
  
  
 
0.716
ENSCHAP00000038647
Claudin 15b.
  
 
0.712
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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