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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000009990Carbohydrate sulfotransferase 6. (400 aa)    
Predicted Functional Partners:
LOC105889489
Carbohydrate sulfotransferase 2-like.
  
  
 
0.829
chst2
Carbohydrate sulfotransferase 2.
  
  
 
0.829
ENSCHAP00000010055
Keratocan.
     
 0.824
lum
Lumican.
     
 0.776
LOC105890637
Mimecan-like.
     
 0.586
ENSCHAP00000045676
Osteoglycin, paralog a.
     
 0.586
LOC105893645
Biglycan-like.
     
 0.531
bgn
Biglycan.
     
 0.531
ENSCHAP00000045604
Asporin (LRR class 1).
     
 0.531
ENSCHAP00000020766
Family with sequence similarity 210 member B.
   
  
 0.520
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.