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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcnDecorin. (371 aa)    
Predicted Functional Partners:
lum
Lumican.
  
  
0.958
LOC105890611
Transforming growth factor beta-1-like.
    
 0.954
ENSCHAP00000035525
Transforming growth factor, beta 1b.
    
 0.954
ENSCHAP00000007881
Toll-like receptor 4b, duplicate a.
     
 0.924
ENSCHAP00000015102
Transforming growth factor, beta 5.
    
 0.905
tgfb2
Transforming growth factor beta 2.
    
 0.905
tgfb3
Transforming growth factor beta 3.
   
 0.900
sparc
Secreted protein acidic and cysteine rich.
   
  
 0.898
ENSCHAP00000016391
Macrophage stimulating 1 receptor b.
   
 0.857
ENSCHAP00000041906
Macrophage stimulating 1 receptor a.
   
 0.857
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.