STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lumLumican. (340 aa)    
Predicted Functional Partners:
dcn
Decorin.
  
  
0.958
sparc
Secreted protein acidic and cysteine rich.
   
  
 0.952
ENSCHAP00000015102
Transforming growth factor, beta 5.
    
 0.869
tgfb2
Transforming growth factor beta 2.
    
 0.869
LOC105904165
Fibromodulin-like.
  
 
0.859
fmod
Fibromodulin.
  
 
0.859
LOC105890637
Mimecan-like.
 
 
 
0.827
ENSCHAP00000045676
Osteoglycin, paralog a.
 
 
 
0.827
ENSCHAP00000027714
Aggrecan b.
    
 0.809
ENSCHAP00000029990
Aggrecan a.
    
 0.809
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.