STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scnm1Sodium channel modifier 1. (253 aa)    
Predicted Functional Partners:
armc7
Armadillo repeat containing 7.
    
 
 0.938
sf3b3
Splicing factor 3b subunit 3.
    
   0.934
sf3b1
Splicing factor 3b subunit 1.
    
   0.927
rnf113a
Ring finger protein 113A.
   
   0.909
cdc5l
Cell division cycle 5 like.
    
   0.906
prpf8
pre-mRNA processing factor 8.
    
   0.906
ENSCHAP00000035894
Splicing factor 3b, subunit 2.
    
   0.906
sf3b6
Splicing factor 3b subunit 6.
    
   0.871
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
    
 
 0.811
ENSCHAP00000033639
RNA binding motif protein 48.
    
 
 0.800
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.