STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105894163Sodium/calcium exchanger 1-like. (958 aa)    
Predicted Functional Partners:
ENSCHAP00000028950
Fraser extracellular matrix complex subunit 1.
   
0.866
LOC105899109
cAMP-dependent protein kinase catalytic subunit beta.
   
 
 0.849
ENSCHAP00000000290
Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a.
   
 
 0.817
ENSCHAP00000017630
Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b.
   
 
 0.817
ENSCHAP00000013110
annotation not available
     
 0.554
ENSCHAP00000004501
Solute carrier family 24 member 4a.
   
 
0.519
ENSCHAP00000007524
Solute carrier family 24 member 4b.
   
 
0.519
SLC24A3
Solute carrier family 24 member 3.
   
 
0.519
ENSCHAP00000019331
Solute carrier family 24 member 3.
   
 
0.519
LOC105898076
cAMP-dependent protein kinase catalytic subunit PRKX-like.
   
 
 0.491
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.