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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000010079Cadherin EGF LAG seven-pass G-type receptor 1b. (3033 aa)    
Predicted Functional Partners:
ENSCHAP00000046795
VANGL planar cell polarity protein 2.
    
 0.635
VANGL1
VANGL planar cell polarity protein 1.
    
 0.635
ENSCHAP00000038324
Prickle homolog 1a.
   
 0.511
ENSCHAP00000042305
Ubiquinol-cytochrome c reductase core protein 1.
 
   
  0.490
ENSCHAP00000056665
Peptidase (mitochondrial processing) beta.
 
   
  0.483
ENSCHAP00000046293
Frizzled class receptor 6.
    
 0.475
ENSCHAP00000057491
Peptidase (mitochondrial processing) alpha.
 
   
  0.461
ENSCHAP00000054279
Prickle homolog 1b.
   
 0.452
ENSCHAP00000058653
Prickle homolog 2b.
   
 0.452
LOC105898959
Prickle-like protein 2.
   
 0.449
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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