STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tgs1Trimethylguanosine synthase 1. (945 aa)    
Predicted Functional Partners:
snrpf
Small nuclear ribonucleoprotein polypeptide F.
    
  0.987
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
    
 0.986
snrpe
Small nuclear ribonucleoprotein polypeptide E.
    
 0.984
snrpg
Small nuclear ribonucleoprotein polypeptide G.
    
  0.983
ENSCHAP00000051313
Nuclear receptor coactivator 6.
    
 0.902
ENSCHAP00000035127
N(alpha)-acetyltransferase 38, NatC auxiliary subunit.
    
 0.854
snrpb
Small nuclear ribonucleoprotein polypeptides B and B1.
    
 0.854
ENSCHAP00000057360
annotation not available
    
 0.854
ENSCHAP00000022921
annotation not available
    
 0.853
ncbp2
Nuclear cap binding protein subunit 2.
    
 
 0.828
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.