STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000010176Splicing factor 1. (677 aa)    
Predicted Functional Partners:
ENSCHAP00000016388
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.998
ENSCHAP00000001746
Splicing factor 3a, subunit 1.
   
 0.997
sf3a2
Splicing factor 3a subunit 2.
   
 0.996
ENSCHAP00000004933
U2 small nuclear RNA auxiliary factor 2a.
   
 0.995
LOC105902020
Splicing factor U2AF 65 kDa subunit-like.
   
 0.995
trnau1ap
tRNA selenocysteine 1 associated protein 1.
    
 0.994
sf3b1
Splicing factor 3b subunit 1.
   
 0.991
ENSCHAP00000027239
annotation not available
   
 0.989
ENSCHAP00000035332
Splicing factor 3a, subunit 3.
   
 0.985
ENSCHAP00000000197
U2 small nuclear RNA auxiliary factor 1.
 
 
 0.979
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.