STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttrTransthyretin. (149 aa)    
Predicted Functional Partners:
rbp4
Retinol binding protein 4.
   
 0.993
gc
GC vitamin D binding protein.
   
  
 0.902
stra6
Stimulated by retinoic acid 6.
   
 0.789
ENSCHAP00000021848
annotation not available
   
 0.778
ENSCHAP00000033022
Amyloid beta (A4) precursor protein b.
    
 0.771
APP
Amyloid beta precursor protein.
    
 0.771
allc
Allantoicase.
  
 
 0.732
ENSCHAP00000050025
Kynurenine 3-monooxygenase.
  
 
 0.725
aplp2
Amyloid beta precursor like protein 2.
    
 0.719
ENSCHAP00000005887
Squalene epoxidase b.
  
 
 0.668
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.