ENSCHAP00000010268 protein (Clupea harengus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCHAP00000010268

Lengsin, lens protein with glutamine synthetase domain. (660 aa)

Predicted Functional Partners:

aldh18a1

0.941

ENSCHAP00000010007

0.941

ppat

0.918

ENSCHAP00000048265

0.914

gldc

0.910

ENSCHAP00000048783

0.908

LOC105904123

0.908

ENSCHAP00000026988

0.903

ENSCHAP00000056641

0.902

ENSCHAP00000000677

0.896

Your Current Organism:

Clupea harengus

NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCHAP00000000677	ENSCHAP00000010007	ENSCHAP00000000677	ENSCHAP00000010007	Aldehyde dehydrogenase 4 family, member A1.	Aldehyde dehydrogenase 18 family, member A1.	0.936
ENSCHAP00000000677	ENSCHAP00000010268	ENSCHAP00000000677	ENSCHAP00000010268	Aldehyde dehydrogenase 4 family, member A1.	Lengsin, lens protein with glutamine synthetase domain.	0.896
ENSCHAP00000000677	ENSCHAP00000026988	ENSCHAP00000000677	ENSCHAP00000026988	Aldehyde dehydrogenase 4 family, member A1.	glutamyl-prolyl-tRNA synthetase 1.	0.914
ENSCHAP00000000677	ENSCHAP00000048265	ENSCHAP00000000677	ENSCHAP00000048265	Aldehyde dehydrogenase 4 family, member A1.	Glutamate-ammonia ligase (glutamine synthase) a.	0.896
ENSCHAP00000000677	ENSCHAP00000048783	ENSCHAP00000000677	ENSCHAP00000048783	Aldehyde dehydrogenase 4 family, member A1.	Glutamate dehydrogenase 1a.	0.929
ENSCHAP00000000677	ENSCHAP00000056641	ENSCHAP00000000677	ENSCHAP00000056641	Aldehyde dehydrogenase 4 family, member A1.	Glutamate-ammonia ligase (glutamine synthase) c.	0.896
ENSCHAP00000000677	LOC105904123	ENSCHAP00000000677	ENSCHAP00000051702	Aldehyde dehydrogenase 4 family, member A1.	Glutamate dehydrogenase, mitochondrial.	0.929
ENSCHAP00000000677	aldh18a1	ENSCHAP00000000677	ENSCHAP00000009559	Aldehyde dehydrogenase 4 family, member A1.	Aldehyde dehydrogenase 18 family member A1.	0.936
ENSCHAP00000000677	gldc	ENSCHAP00000000677	ENSCHAP00000029512	Aldehyde dehydrogenase 4 family, member A1.	Glycine decarboxylase.	0.888
ENSCHAP00000010007	ENSCHAP00000000677	ENSCHAP00000010007	ENSCHAP00000000677	Aldehyde dehydrogenase 18 family, member A1.	Aldehyde dehydrogenase 4 family, member A1.	0.936
ENSCHAP00000010007	ENSCHAP00000010268	ENSCHAP00000010007	ENSCHAP00000010268	Aldehyde dehydrogenase 18 family, member A1.	Lengsin, lens protein with glutamine synthetase domain.	0.941
ENSCHAP00000010007	ENSCHAP00000026988	ENSCHAP00000010007	ENSCHAP00000026988	Aldehyde dehydrogenase 18 family, member A1.	glutamyl-prolyl-tRNA synthetase 1.	0.788
ENSCHAP00000010007	ENSCHAP00000048265	ENSCHAP00000010007	ENSCHAP00000048265	Aldehyde dehydrogenase 18 family, member A1.	Glutamate-ammonia ligase (glutamine synthase) a.	0.941
ENSCHAP00000010007	ENSCHAP00000048783	ENSCHAP00000010007	ENSCHAP00000048783	Aldehyde dehydrogenase 18 family, member A1.	Glutamate dehydrogenase 1a.	0.937
ENSCHAP00000010007	ENSCHAP00000056641	ENSCHAP00000010007	ENSCHAP00000056641	Aldehyde dehydrogenase 18 family, member A1.	Glutamate-ammonia ligase (glutamine synthase) c.	0.941
ENSCHAP00000010007	LOC105904123	ENSCHAP00000010007	ENSCHAP00000051702	Aldehyde dehydrogenase 18 family, member A1.	Glutamate dehydrogenase, mitochondrial.	0.937
ENSCHAP00000010007	aldh18a1	ENSCHAP00000010007	ENSCHAP00000009559	Aldehyde dehydrogenase 18 family, member A1.	Aldehyde dehydrogenase 18 family member A1.	0.999
ENSCHAP00000010007	gldc	ENSCHAP00000010007	ENSCHAP00000029512	Aldehyde dehydrogenase 18 family, member A1.	Glycine decarboxylase.	0.576
ENSCHAP00000010007	ppat	ENSCHAP00000010007	ENSCHAP00000024851	Aldehyde dehydrogenase 18 family, member A1.	Phosphoribosyl pyrophosphate amidotransferase.	0.622
ENSCHAP00000010268	ENSCHAP00000000677	ENSCHAP00000010268	ENSCHAP00000000677	Lengsin, lens protein with glutamine synthetase domain.	Aldehyde dehydrogenase 4 family, member A1.	0.896