STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000010300Calcium channel, voltage-dependent, L type, alpha 1S subunit, a. (1737 aa)    
Predicted Functional Partners:
UNC79
Unc-79 homolog, NALCN channel complex subunit.
   
 0.998
CACNG1
Calcium voltage-gated channel auxiliary subunit gamma 1.
   
 0.858
LOC105898521
Voltage-dependent calcium channel gamma-1 subunit-like.
   
 0.858
ENSCHAP00000004230
Calcium channel, voltage-dependent, beta 2b.
   
 0.843
ENSCHAP00000012838
Calcium channel, voltage-dependent, beta 4b subunit.
   
 0.843
ENSCHAP00000034826
Calcium channel, voltage-dependent, beta 1 subunit.
   
 0.843
calm1
Calmodulin.
    
 0.815
ENSCHAP00000007904
annotation not available
    
 0.815
calm1-2
Calmodulin.
    
 0.815
ENSCHAP00000008308
Calcium channel, voltage-dependent, beta 3a.
   
 0.805
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.