STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000010323Protein kinase D2. (889 aa)    
Predicted Functional Partners:
ENSCHAP00000028881
cAMP responsive element binding protein 5b.
     
 0.696
ENSCHAP00000030337
Activating transcription factor 7a.
     
 0.581
atf2
Activating transcription factor 2.
     
 0.581
ENSCHAP00000010301
Integrin, beta 1b.
    
  0.537
ENSCHAP00000029695
annotation not available
    
  0.537
LOC105907972
Integrin beta-2-like.
    
  0.537
ENSCHAP00000035381
Integrin, beta 2.
    
  0.537
ENSCHAP00000037948
annotation not available
    
  0.537
itgb5
Integrin subunit beta 5.
    
  0.534
ENSCHAP00000021013
Integrin beta 3a.
    
  0.534
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.