STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000010328Atonal bHLH transcription factor 1c. (213 aa)    
Predicted Functional Partners:
ENSCHAP00000001463
annotation not available
    
 
 0.637
ENSCHAP00000016407
annotation not available
    
 
 0.637
TCF4
Transcription factor 4.
    
 
 0.637
tcf12
Transcription factor 12.
    
 
 0.637
LOC105906899
Cerebellin-1-like.
      
 0.428
LOC105889025
Achaete-scute homolog 1b-like.
   
 
 0.404
ascl1
Achaete-scute family bHLH transcription factor 1.
   
 
 0.404
LOC105908786
Achaete-scute homolog 1b-like.
   
 
 0.404
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.