STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000010378Hydroxyacid oxidase (glycolate oxidase) 1. (382 aa)    
Predicted Functional Partners:
ldhd
Lactate dehydrogenase D.
 
 0.970
LOC105906266
Malate synthase, glyoxysomal-like.
  
 
 0.955
ENSCHAP00000022800
Alanine--glyoxylate and serine--pyruvate aminotransferase b.
  
 0.953
agxt
Alanine--glyoxylate and serine--pyruvate aminotransferase.
  
 0.953
mvd
Mevalonate diphosphate decarboxylase.
    
 0.937
ENSCHAP00000029384
Gametogenetin binding protein 2.
  
 0.930
ENSCHAP00000033699
3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble).
  
 
 0.925
ENSCHAP00000060429
annotation not available
  
 
 0.923
ENSCHAP00000059949
Glyoxylate reductase/hydroxypyruvate reductase b.
  
 
 0.921
aadat
Aminoadipate aminotransferase.
  
 
 0.909
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.