ENSCHAP00000010381 protein (Clupea harengus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ENSCHAP00000010381

annotation not available (201 aa)

Predicted Functional Partners:

ENSCHAP00000031755

0.733

LOC105891883

0.635

hoxb4

0.615

ENSCHAP00000014298

0.583

LOC105897002

0.583

ENSCHAP00000025726

0.583

dhx36

0.577

ENSCHAP00000020258

0.559

hoxd4

0.555

ENSCHAP00000015326

0.549

Your Current Organism:

Clupea harengus

NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCHAP00000010381	ENSCHAP00000014298	ENSCHAP00000010381	ENSCHAP00000014298	annotation not available	Paired box 9.	0.583
ENSCHAP00000010381	ENSCHAP00000015326	ENSCHAP00000010381	ENSCHAP00000015326	annotation not available	EWS RNA-binding protein 1a.	0.549
ENSCHAP00000010381	ENSCHAP00000020258	ENSCHAP00000010381	ENSCHAP00000020258	annotation not available	Pbx/knotted 1 homeobox 1.2.	0.559
ENSCHAP00000010381	ENSCHAP00000025726	ENSCHAP00000010381	ENSCHAP00000025726	annotation not available	Paired box 1a.	0.583
ENSCHAP00000010381	ENSCHAP00000031755	ENSCHAP00000010381	ENSCHAP00000031755	annotation not available	Forkhead box N1.	0.733
ENSCHAP00000010381	LOC105891883	ENSCHAP00000010381	ENSCHAP00000011766	annotation not available	pre-B-cell leukemia transcription factor 2-like.	0.635
ENSCHAP00000010381	LOC105897002	ENSCHAP00000010381	ENSCHAP00000024954	annotation not available	Paired box protein Pax-1-like.	0.583
ENSCHAP00000010381	dhx36	ENSCHAP00000010381	ENSCHAP00000049496	annotation not available	DEAH-box helicase 36.	0.577
ENSCHAP00000010381	hoxb4	ENSCHAP00000010381	ENSCHAP00000024179	annotation not available	Homeobox B4.	0.615
ENSCHAP00000010381	hoxd4	ENSCHAP00000010381	ENSCHAP00000058985	annotation not available	Homeobox D4.	0.555
ENSCHAP00000014298	ENSCHAP00000010381	ENSCHAP00000014298	ENSCHAP00000010381	Paired box 9.	annotation not available	0.583
ENSCHAP00000014298	ENSCHAP00000031755	ENSCHAP00000014298	ENSCHAP00000031755	Paired box 9.	Forkhead box N1.	0.486
ENSCHAP00000015326	ENSCHAP00000010381	ENSCHAP00000015326	ENSCHAP00000010381	EWS RNA-binding protein 1a.	annotation not available	0.549
ENSCHAP00000015326	ENSCHAP00000031755	ENSCHAP00000015326	ENSCHAP00000031755	EWS RNA-binding protein 1a.	Forkhead box N1.	0.418
ENSCHAP00000015326	dhx36	ENSCHAP00000015326	ENSCHAP00000049496	EWS RNA-binding protein 1a.	DEAH-box helicase 36.	0.409
ENSCHAP00000020258	ENSCHAP00000010381	ENSCHAP00000020258	ENSCHAP00000010381	Pbx/knotted 1 homeobox 1.2.	annotation not available	0.559
ENSCHAP00000020258	LOC105891883	ENSCHAP00000020258	ENSCHAP00000011766	Pbx/knotted 1 homeobox 1.2.	pre-B-cell leukemia transcription factor 2-like.	0.782
ENSCHAP00000020258	hoxb4	ENSCHAP00000020258	ENSCHAP00000024179	Pbx/knotted 1 homeobox 1.2.	Homeobox B4.	0.414
ENSCHAP00000025726	ENSCHAP00000010381	ENSCHAP00000025726	ENSCHAP00000010381	Paired box 1a.	annotation not available	0.583
ENSCHAP00000025726	ENSCHAP00000031755	ENSCHAP00000025726	ENSCHAP00000031755	Paired box 1a.	Forkhead box N1.	0.486