STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000010390Ceramide kinase-like. (587 aa)    
Predicted Functional Partners:
asah2
N-acylsphingosine amidohydrolase 2.
    
 0.915
ENSCHAP00000051462
UDP-glucose ceramide glucosyltransferase.
    
 0.902
gba2
Glucosylceramidase beta 2.
     
 0.900
ENSCHAP00000004831
Sphingomyelin phosphodiesterase acid like 3B.
    
 0.894
degs2
Delta 4-desaturase, sphingolipid 2.
    
 0.891
acer1
Alkaline ceramidase 1.
    
 0.889
ENSCHAP00000005169
Sphingomyelin phosphodiesterase 2b.
     
 0.881
ACER2
Alkaline ceramidase 2-like.
    
 0.871
ENSCHAP00000055653
annotation not available
    
 0.871
ENSCHAP00000022169
Sphingomyelin phosphodiesterase 4.
     
 0.866
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.