STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000010449Ankyrin repeat and SOCS box containing 2a, tandem duplicate 1. (691 aa)    
Predicted Functional Partners:
cul5
Cullin 5.
    
 0.835
rnf7
Ring finger protein 7.
    
 0.748
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.734
ENSCHAP00000007825
NEDD8 ubiquitin like modifier, like.
    
  0.683
ENSCHAP00000029762
COMM domain containing 8.
   
  0.681
ENSCHAP00000028527
Copper metabolism (Murr1) domain containing 1.
    
  0.661
ift81
Intraflagellar transport 81.
    
 0.648
LOC105895938
Cullin-associated NEDD8-dissociated protein 1-like.
    
  0.645
ENSCHAP00000008719
COMM domain containing 4.
    
 0.641
ENSCHAP00000048980
annotation not available
    
  0.632
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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