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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000010472annotation not available (859 aa)    
Predicted Functional Partners:
LOC105889354
poly(U)-binding-splicing factor PUF60-B-like.
   
 
 0.793
puf60
poly(U) binding splicing factor 60.
   
 
 0.793
parn
poly(A)-specific ribonuclease.
    
 0.746
exosc2
Exosome component 2.
   
  0.669
ENSCHAP00000038398
Decapping mRNA 2.
     
 0.636
exosc5
Exosome component 5.
     
 0.621
ENSCHAP00000013862
DIS3 exosome endoribonuclease and 3'-5' exoribonuclease.
     
 0.617
exosc7
Exosome component 7.
   
 
  0.613
exosc4
Exosome component 4.
   
 
  0.610
LOC105901861
14-3-3 protein beta/alpha-1.
   
 
  0.608
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.