STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105891890Hepatocyte nuclear factor 6-like. (455 aa)    
Predicted Functional Partners:
ENSCHAP00000013069
Origin recognition complex, subunit 3.
    
 
 0.707
ENSCHAP00000029235
Cyclin G2.
    
 
 0.475
ENSCHAP00000008000
Neurogenin 3.
   
 
 0.459
hnf1b
HNF1 homeobox B.
     
 0.450
ENSCHAP00000033355
Pancreatic and duodenal homeobox 1.
     
 0.422
ENSCHAP00000024103
Recombination signal binding protein for immunoglobulin kappa J region-like.
   
 
 0.410
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.