STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105905820Stromal cell-derived factor 1-like. (100 aa)    
Predicted Functional Partners:
ENSCHAP00000057752
annotation not available
   
 0.985
ENSCHAP00000049482
Chemokine (C-X-C motif) ligand 8a.
   
 0.984
LOC105908661
Atypical chemokine receptor 3-like.
    
 0.974
ackr3
Atypical chemokine receptor 3.
    
 0.974
cxcl14
C-X-C motif chemokine ligand 14.
  
 
 0.966
LOC105912404
C-X-C chemokine receptor type 4-like.
   
 0.958
CXCR4
C-X-C motif chemokine receptor 4.
   
 0.956
ENSCHAP00000003834
Chemokine (C-X-C motif) ligand 19.
    
 0.953
ENSCHAP00000008194
Chemokine (C-C motif) receptor 7.
    
 0.926
ENSCHAP00000010918
Chemokine (C-X-C motif) receptor 5.
    
 0.926
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.