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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000010539annotation not available (562 aa)    
Predicted Functional Partners:
gch1
GTP cyclohydrolase 1.
   
 
  0.846
ENSCHAP00000061377
Alkaline phosphatase, intestinal, tandem duplicate 1.
  
  
 
0.775
psat1
Phosphoserine aminotransferase 1.
     
 0.768
ENSCHAP00000062356
Acid phosphatase 7, tartrate resistant (putative).
  
 
 0.765
ENSCHAP00000033630
Acid phosphatase 1.
    
 0.740
nadk
NAD kinase.
   
 
  0.732
shmt2
Serine hydroxymethyltransferase 2.
  
 
  0.730
ENSCHAP00000030664
Multiple inositol-polyphosphate phosphatase 1a.
   
 
 0.723
ENSCHAP00000028364
Thiamin pyrophosphokinase 2.
    
 0.722
CLPB
ClpB homolog, mitochondrial AAA ATPase chaperonin.
    
 0.709
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.