STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000010574Sorting nexin 10a. (199 aa)    
Predicted Functional Partners:
vps26a
VPS26, retromer complex component A.
    
 0.897
vps26b
VPS26, retromer complex component B.
    
 0.897
ENSCHAP00000057597
Sorting nexin 15.
     
 0.878
ENSCHAP00000024532
annotation not available
     
 0.841
vps29
VPS29 retromer complex component.
   
 0.833
ENSCHAP00000030161
Wnt ligand secretion mediator.
    
 0.755
snx5
Sorting nexin 5.
   
 0.702
ENSCHAP00000062643
Si:dkey-28n18.9.
    
 0.697
usp10
Ubiquitin specific peptidase 10.
    
 0.696
ENSCHAP00000035722
TBC1 domain family, member 5.
    
 0.614
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.