STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yipf5Yip1 domain family member 5. (257 aa)    
Predicted Functional Partners:
yif1a
Yip1 interacting factor homolog A, membrane trafficking protein.
   
 
 0.889
ENSCHAP00000046946
Yip1 interacting factor homolog B (S. cerevisiae).
   
 
 0.889
ENSCHAP00000014943
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
   
 
 0.864
rnf139
Ring finger protein 139.
    
 0.863
LOC105891268
Transitional endoplasmic reticulum ATPase-like.
    
 0.851
SPATA5
Spermatogenesis associated 5.
    
 0.851
LOC105901173
Transitional endoplasmic reticulum ATPase.
    
 0.851
ENSCHAP00000001290
Autocrine motility factor receptor a.
    
 0.840
ENSCHAP00000052133
Synovial apoptosis inhibitor 1, synoviolin.
    
 0.840
LOC105894475
Platelet-activating factor acetylhydrolase-like.
   
 
  0.816
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.