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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prpf39pre-mRNA processing factor 39. (791 aa)    
Predicted Functional Partners:
trnau1ap
tRNA selenocysteine 1 associated protein 1.
   
 0.991
ENSCHAP00000058027
Small nuclear ribonucleoprotein polypeptide C.
   
 0.987
sf3b1
Splicing factor 3b subunit 1.
   
 0.986
ENSCHAP00000046146
Small nuclear ribonucleoprotein polypeptide A.
    
 0.982
snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.978
ncbp2
Nuclear cap binding protein subunit 2.
    
 0.977
luc7l
LUC7 like.
   
 0.972
luc7l3
LUC7 like 3 pre-mRNA splicing factor.
   
 0.969
snrnp70
Small nuclear ribonucleoprotein U1 subunit 70.
   
 0.967
snrnp35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 0.967
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.