STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000010669Transient receptor potential cation channel, subfamily C, member 4 associated protein b. (768 aa)    
Predicted Functional Partners:
ENSCHAP00000012285
Damage-specific DNA binding protein 1.
    
 0.965
ENSCHAP00000044410
Cullin 4B.
    
 0.928
ENSCHAP00000019713
WD repeat domain 21.
   
 
 0.900
ENSCHAP00000050211
Ddb1 and cul4 associated factor 6.
    
 0.899
dcaf5
DDB1 and CUL4 associated factor 5.
     
 0.895
dcaf8
DDB1 and CUL4 associated factor 8.
    
 0.880
rbx1
Ring-box 1.
    
 0.854
ENSCHAP00000060940
DDB1 and CUL4 associated factor 12.
     
 0.850
ENSCHAP00000050553
WD repeat domain 76.
     
 0.839
ENSCHAP00000009829
annotation not available
   
 
  0.825
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.